PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025658-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 605aa    MW: 64999.1 Da    PI: 6.7329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025658-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08411458455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  NNU_025658-RA 411 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 458
                    8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.99E-11405462No hitNo description
SuperFamilySSF474595.1E-17405476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17407475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663407457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-6411458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10413463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEKEKLFMNS GSPPPLSYAA SSSSPPPTWH SASSGMDVQV GELNCSSEQM RNCYVNLNWE  60
NSMDQSGAFE SSLSSMVSSP VASNATIHGG PLALRELIGR LGNMGNSGDI SPQSQTLGGS  120
AVSYIGGNNS TNTSCYSTPL NSPPKLNLSM MDQQLRGNLP ILGNSMPTHP SLVPFSTDPG  180
FAERAARFSC FGNGNFRGLP CQFGFNENEF SYRPAPRLEN GKLSRVSSSQ CLKAAGSQLG  240
GQENKEAQLQ DGSETEMRSA AAASALASER KFSKLPGSST PESAEFASAR EESSASEQIP  300
GGEAGLKGSN DANTRKRKAA PRGKAKDPSS SPSGKDEKTA LEKEDQNAKK CKSSDSTGNE  360
NNESKAKAEP CGSNNTAGDA DQKQSKETPK PPEPPKDYIH VRARRGQATD SHSLAERVRR  420
EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNME  480
SLLSKDILQS RGSLPHTVYP LDSSASTFPY AQHTQQGLPL QSSISNVTET HCSVNPLDAA  540
LRQNVGMQFP PADGFGESAP RVGTFWEDDL QSVVQMGFGQ NQSQAVFHPQ SFHGSLPTAH  600
MKIEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246667.10.0PREDICTED: transcription factor bHLH78
TrEMBLA5AD410.0A5AD41_VITVI; Putative uncharacterized protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-70bHLH family protein